Number cells	40362 (downsampled to 40362)
Number samples	7
Description	antigen-presenting-cells infiltrating tumors from NSCLC patients
Input data description	ScRNA-seq (inDrop) of red blood cells-depleted cells from non-small cell lung tumor. Data from (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE127465)
Tissue	tumor (lung)
Contributors
Reference	10.1016/j.immuni.2019.03.009

History

2021-08-19 09:092021-08-19 09:09:11

Sample annotation

2021-08-19 09:092021-08-19 09:09:152021-08-19 09:09:15, Wait 0s, Run 7m 45s

Projection pipeline (33/26)

Downsampled to 5000 cells
Data loaded [ 41861 genes, 30024 cells]
Reference atlas loaded
Using assay RNA for patient1
3395 out of 5000 ( 68% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient1 to reference map for batch-correction
Using assay RNA for patient2
425 out of 492 ( 86% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient2 to reference map for batch-correction
Using assay RNA for patient3
4261 out of 5000 ( 85% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient3 to reference map for batch-correction
Using assay RNA for patient4
4242 out of 4956 ( 86% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient4 to reference map for batch-correction
Using assay RNA for patient5
3457 out of 4576 ( 76% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient5 to reference map for batch-correction
Using assay RNA for patient6
4007 out of 5000 ( 80% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient6 to reference map for batch-correction
Using assay RNA for patient7
2526 out of 5000 ( 51% ) non-pure target cells removed
Transforming expression matrix into space of mouse orthologs
Aligning patient7 to reference map for batch-correction
Data projected
Cell states predicted

Full log

Mem: 2.5Mb, Swap: 0b

2021-08-19 14:312021-08-19 14:31:082021-08-19 14:31:08, Wait 0s, Run 19s

Custom radar plots (3/3)

Reference loaded
Data loaded
Radar plots generated

Full log

Mem: 2.5Mb, Swap: 0b