SPICA

Number cells	6000 (downsampled to 0)
Number samples	2
Description	TILs from Responders and Non-Responders to ICB in breast cancer patients.
Input data description	scRNA-seq was performed on tumor biopsies from breast cancer patients, taken immediately before receiving anti-PD1 immunotherapy. In this study the authors use T cell expansion following treatment as a proxy for response. For SPICA analysis, only samples with at least 500 T cells were considered (N=13, of which 7 correspond to responders and 6 non-responders).
Tissue	tumor (breast carcinoma)
Timepoints	pre-treatment
Condition	breast carcinoma
Contributors
Reference	10.1038/s41591-021-01323-8

2021-08-11 12:492021-08-11 12:49:19

Sample annotation

2021-08-11 12:492021-08-11 12:49:342021-08-11 12:49:34, Wait 0s, Run 5m 41s

Projection pipeline (13/11)

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2021-08-11 13:072021-08-11 13:07:462021-08-11 13:07:46, Wait 0s, Run 13s

Custom radar plots (3/3)

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Projection plot using reference atlas tumor-infiltrating T cells

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Composition plot

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Gene expression for predicted cell states

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Discriminant genes

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