History

2021-08-11 08:36
Sample annotation


2021-08-11 08:36, Wait 0s, Run 2m 46s
Projection pipeline (14/14)

  • Downsampled to 2000 cells
  • Data loaded [ 12252 genes, 1680 cells]
  • Reference atlas loaded
  • Using assay RNA for PMEL1
  • 17 out of 519 ( 3% ) non-pure target cells removed
  • Aligning PMEL1 to reference map for batch-correction
  • Using assay RNA for PMEL2
  • 0 out of 552 ( 0% ) non-pure target cells removed
  • Aligning PMEL2 to reference map for batch-correction
  • Using assay RNA for PMEL3
  • 0 out of 609 ( 0% ) non-pure target cells removed
  • Aligning PMEL3 to reference map for batch-correction
  • Data projected
  • Cell states predicted

Full log
Mem: 2.49Mb, Swap: 0b

2021-08-11 08:44, Wait 1587d 1h 54m 31s
Custom radar plots

Projection plot using reference atlas tumor-infiltrating T cells
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Composition plot
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Gene expression for predicted cell states
If you want to modify the gene panel, you should first Clone the project into your workspace.
Click on sample names to show/hide traces
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Discriminant genes
Mobile version in development