History

2021-08-11 09:10
Sample annotation


2021-08-11 09:10, Wait 0s, Run 14m 28s
Projection pipeline (23/23)

  • Downsampled to 2000 cells
  • Data loaded [ 17505 genes, 12000 cells]
  • Reference atlas loaded
  • Using assay RNA for blood
  • 87 out of 2000 ( 4% ) non-pure target cells removed
  • Aligning blood to reference map for batch-correction
  • Using assay RNA for spleen
  • 17 out of 2000 ( 1% ) non-pure target cells removed
  • Aligning spleen to reference map for batch-correction
  • Using assay RNA for bone marrow
  • 120 out of 2000 ( 6% ) non-pure target cells removed
  • Aligning bone marrow to reference map for batch-correction
  • Using assay RNA for lymph node
  • 10 out of 2000 ( 0% ) non-pure target cells removed
  • Aligning lymph node to reference map for batch-correction
  • Using assay RNA for lung
  • 37 out of 2000 ( 2% ) non-pure target cells removed
  • Aligning lung to reference map for batch-correction
  • Using assay RNA for liver
  • 34 out of 2000 ( 2% ) non-pure target cells removed
  • Aligning liver to reference map for batch-correction
  • Data projected
  • Cell states predicted

Full log
Mem: 2.5Mb, Swap: 0b

2021-08-11 09:40, Wait 0s, Run 29s
Custom radar plots (3/3)

  • Reference loaded
  • Data loaded
  • Radar plots generated

Full log
Mem: 2.5Mb, Swap: 0b

2021-08-11 09:42, Wait 0s, Run 30s
Discriminant genes (2/2)

  • Data loaded
  • Discriminant gene analysis

Full log
Mem: 2.5Mb, Swap: 0b

Projection plot using reference atlas virus-specific CD8 T cells
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Composition plot
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Gene expression for predicted cell states
If you want to modify the gene panel, you should first Clone the project into your workspace.
Click on sample names to show/hide traces
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Discriminant genes
-log10(P) threshold 1.3
Log2(FC) threshold 1
Mobile version in development